STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102212080Keratin 8; Belongs to the intermediate filament family. (532 aa)    
Predicted Functional Partners:
LOC102212050
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.892
rps27a
Ribosomal protein S27a.
    
  0.698
bag3
BCL2 associated athanogene 3.
    
 
 0.697
tgm1
Transglutaminase 1 like 1.
    
 
 0.659
ino80e
INO80 complex subunit E.
   
 0.656
LOC102206229
IF rod domain-containing protein; Belongs to the intermediate filament family.
  
0.626
LOC102209656
Si:ch211-156l18.7; Belongs to the intermediate filament family.
  
0.620
ube2w
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.614
LOC102212553
Keratin 18a, tandem duplicate 1; Belongs to the intermediate filament family.
   
0.612
LOC102208903
Keratin 15; Belongs to the intermediate filament family.
  
0.610
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.