STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102200039Inhibitor of DNA binding 4. (141 aa)    
Predicted Functional Partners:
LOC102206228
Inhibitor of DNA binding 3.
  
0.906
id1
Inhibitor of DNA binding 1, HLH protein.
  
  
0.884
id2
Inhibitor of DNA binding 2a.
  
  
 
0.853
LOC102200854
Thrombospondin 1b.
    
  0.730
thbs2
Thrombospondin 2a.
    
  0.730
thbs1
Thrombospondin 1a.
    
  0.730
LOC102193887
Transcription factor 3a.
    
 
 0.709
tcf12
Transcription factor 12.
    
 
 0.709
TCF4
Transcription factor 4.
    
 
 0.709
tcf3
Transcription factor 3b.
    
 
 0.709
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.