STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPNYP00000010375Unc4.1 homeobox (C. elegans). (176 aa)    
Predicted Functional Partners:
SRF
Serum response factor.
    
 0.601
LOC102208386
MADS-box domain-containing protein.
    
 0.601
ldb2
LIM domain binding 2a.
    
 0.534
LOC102205819
LIM-domain binding 1b.
    
 0.534
ldb1
LIM domain binding 1a.
    
 0.534
LOC102194566
BHLH domain-containing protein.
   
 0.531
tpk1
Thiamine pyrophosphokinase; Belongs to the thiamine pyrophosphokinase family.
    
  0.510
LOC102209119
BHLH domain-containing protein.
   
 0.507
lhx4
LIM homeobox 4.
    
 0.487
LHX3
LIM homeobox 3.
    
 0.487
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.