STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tubTUB bipartite transcription factor; Belongs to the TUB family. (495 aa)    
Predicted Functional Partners:
ttc21b
Tetratricopeptide repeat domain 21B.
    
 0.833
IFT122
Intraflagellar transport 122.
    
 0.829
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
    
 0.828
wdr19
WD repeat domain 19.
    
 0.827
wdr35
WD repeat-containing protein 35.
    
 0.805
gpr161
G protein-coupled receptor 161; Belongs to the G-protein coupled receptor 1 family.
     
 0.697
IFT43
Intraflagellar transport 43.
    
 
 0.563
mtg1
Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
    
 
 0.535
ankrd54
Ankyrin repeat domain 54.
    
   0.528
kif4a
Kinesin family member 4; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.508
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.