ENSPNYP00000013984 protein (Pundamilia nyererei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPNYP00000013984

Uncharacterized protein. (249 aa)

Predicted Functional Partners:

ENSPNYP00000027421

0.903

ENSPNYP00000013934

0.780

ENSPNYP00000014450

0.780

LOC102200386

0.729

LOC102196610

0.729

LOC102206568

0.677

ENSPNYP00000006356

0.677

LOC102205977

0.677

LOC102203022

0.677

LOC102198230

0.677

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNYP00000006356	ENSPNYP00000013934	ENSPNYP00000006356	ENSPNYP00000013934	MHC_II_beta domain-containing protein.	Ig-like domain-containing protein.	0.754
ENSPNYP00000006356	ENSPNYP00000013984	ENSPNYP00000006356	ENSPNYP00000013984	MHC_II_beta domain-containing protein.	Uncharacterized protein.	0.677
ENSPNYP00000006356	ENSPNYP00000014450	ENSPNYP00000006356	ENSPNYP00000014450	MHC_II_beta domain-containing protein.	Uncharacterized protein.	0.754
ENSPNYP00000006356	ENSPNYP00000027421	ENSPNYP00000006356	ENSPNYP00000027421	MHC_II_beta domain-containing protein.	Ig-like domain-containing protein.	0.933
ENSPNYP00000006356	LOC102196610	ENSPNYP00000006356	ENSPNYP00000031395	MHC_II_beta domain-containing protein.	Uncharacterized protein.	0.562
ENSPNYP00000013934	ENSPNYP00000006356	ENSPNYP00000013934	ENSPNYP00000006356	Ig-like domain-containing protein.	MHC_II_beta domain-containing protein.	0.754
ENSPNYP00000013934	ENSPNYP00000013984	ENSPNYP00000013934	ENSPNYP00000013984	Ig-like domain-containing protein.	Uncharacterized protein.	0.780
ENSPNYP00000013934	ENSPNYP00000027421	ENSPNYP00000013934	ENSPNYP00000027421	Ig-like domain-containing protein.	Ig-like domain-containing protein.	0.968
ENSPNYP00000013934	LOC102196610	ENSPNYP00000013934	ENSPNYP00000031395	Ig-like domain-containing protein.	Uncharacterized protein.	0.824
ENSPNYP00000013934	LOC102198230	ENSPNYP00000013934	ENSPNYP00000021855	Ig-like domain-containing protein.	Ig-like domain-containing protein.	0.754
ENSPNYP00000013934	LOC102200386	ENSPNYP00000013934	ENSPNYP00000001647	Ig-like domain-containing protein.	Ig_4 domain-containing protein.	0.921
ENSPNYP00000013934	LOC102203022	ENSPNYP00000013934	ENSPNYP00000014700	Ig-like domain-containing protein.	Ig-like domain-containing protein.	0.744
ENSPNYP00000013934	LOC102205977	ENSPNYP00000013934	ENSPNYP00000009246	Ig-like domain-containing protein.	Ig-like domain-containing protein.	0.754
ENSPNYP00000013934	LOC102206568	ENSPNYP00000013934	ENSPNYP00000001627	Ig-like domain-containing protein.	Ig-like domain-containing protein.	0.754
ENSPNYP00000013984	ENSPNYP00000006356	ENSPNYP00000013984	ENSPNYP00000006356	Uncharacterized protein.	MHC_II_beta domain-containing protein.	0.677
ENSPNYP00000013984	ENSPNYP00000013934	ENSPNYP00000013984	ENSPNYP00000013934	Uncharacterized protein.	Ig-like domain-containing protein.	0.780
ENSPNYP00000013984	ENSPNYP00000014450	ENSPNYP00000013984	ENSPNYP00000014450	Uncharacterized protein.	Uncharacterized protein.	0.780
ENSPNYP00000013984	ENSPNYP00000027421	ENSPNYP00000013984	ENSPNYP00000027421	Uncharacterized protein.	Ig-like domain-containing protein.	0.903
ENSPNYP00000013984	LOC102196610	ENSPNYP00000013984	ENSPNYP00000031395	Uncharacterized protein.	Uncharacterized protein.	0.729
ENSPNYP00000013984	LOC102198230	ENSPNYP00000013984	ENSPNYP00000021855	Uncharacterized protein.	Ig-like domain-containing protein.	0.677