slc24a5 protein (Pundamilia nyererei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

slc24a5

Solute carrier family 24 member 5; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (471 aa)

Predicted Functional Partners:

LOC102197983

0.724

get4

0.660

pmel

0.649

oca2

0.645

tyr

0.644

mc1r

0.591

tpcn2

0.547

TYR

0.546

agpat3

0.545

edar

0.545

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102197983	mc1r	ENSPNYP00000009447	ENSPNYP00000021349	Tyrosinase related protein 1.	Melanocyte-stimulating hormone receptor; Receptor for MSH (alpha, beta and gamma) and ACTH. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family.	0.700
LOC102197983	oca2	ENSPNYP00000009447	ENSPNYP00000024049	Tyrosinase related protein 1.	Oculocutaneous albinism II.	0.589
LOC102197983	pmel	ENSPNYP00000009447	ENSPNYP00000026696	Tyrosinase related protein 1.	Premelanosome protein a.	0.585
LOC102197983	slc24a5	ENSPNYP00000009447	ENSPNYP00000014438	Tyrosinase related protein 1.	Solute carrier family 24 member 5; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.724
TYR	mc1r	ENSPNYP00000030965	ENSPNYP00000021349	Tyrosinase.	Melanocyte-stimulating hormone receptor; Receptor for MSH (alpha, beta and gamma) and ACTH. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family.	0.471
TYR	oca2	ENSPNYP00000030965	ENSPNYP00000024049	Tyrosinase.	Oculocutaneous albinism II.	0.468
TYR	pmel	ENSPNYP00000030965	ENSPNYP00000026696	Tyrosinase.	Premelanosome protein a.	0.446
TYR	slc24a5	ENSPNYP00000030965	ENSPNYP00000014438	Tyrosinase.	Solute carrier family 24 member 5; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.546
TYR	tyr	ENSPNYP00000030965	ENSPNYP00000019138	Tyrosinase.	Tyrosinase.	0.852
agpat3	slc24a5	ENSPNYP00000021340	ENSPNYP00000014438	1-acylglycerol-3-phosphate O-acyltransferase 3.	Solute carrier family 24 member 5; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.545
edar	slc24a5	ENSPNYP00000024611	ENSPNYP00000014438	Ectodysplasin A receptor.	Solute carrier family 24 member 5; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.545
get4	slc24a5	ENSPNYP00000004887	ENSPNYP00000014438	Guided entry of tail-anchored proteins factor 4.	Solute carrier family 24 member 5; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.660
mc1r	LOC102197983	ENSPNYP00000021349	ENSPNYP00000009447	Melanocyte-stimulating hormone receptor; Receptor for MSH (alpha, beta and gamma) and ACTH. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family.	Tyrosinase related protein 1.	0.700
mc1r	TYR	ENSPNYP00000021349	ENSPNYP00000030965	Melanocyte-stimulating hormone receptor; Receptor for MSH (alpha, beta and gamma) and ACTH. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family.	Tyrosinase.	0.471
mc1r	oca2	ENSPNYP00000021349	ENSPNYP00000024049	Melanocyte-stimulating hormone receptor; Receptor for MSH (alpha, beta and gamma) and ACTH. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family.	Oculocutaneous albinism II.	0.726
mc1r	pmel	ENSPNYP00000021349	ENSPNYP00000026696	Melanocyte-stimulating hormone receptor; Receptor for MSH (alpha, beta and gamma) and ACTH. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family.	Premelanosome protein a.	0.457
mc1r	slc24a5	ENSPNYP00000021349	ENSPNYP00000014438	Melanocyte-stimulating hormone receptor; Receptor for MSH (alpha, beta and gamma) and ACTH. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family.	Solute carrier family 24 member 5; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.591
mc1r	tyr	ENSPNYP00000021349	ENSPNYP00000019138	Melanocyte-stimulating hormone receptor; Receptor for MSH (alpha, beta and gamma) and ACTH. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family.	Tyrosinase.	0.570
oca2	LOC102197983	ENSPNYP00000024049	ENSPNYP00000009447	Oculocutaneous albinism II.	Tyrosinase related protein 1.	0.589
oca2	TYR	ENSPNYP00000024049	ENSPNYP00000030965	Oculocutaneous albinism II.	Tyrosinase.	0.468