STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdh22Cadherin 22; Cadherins are calcium-dependent cell adhesion proteins. (805 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.647
fjx1
Four-jointed box kinase 1.
   
  0.570
PKP4
Plakophilin 4.
    
 0.562
ENSPNYP00000026779
Uncharacterized protein.
    
 0.562
ctnnd2
Catenin (cadherin-associated protein), delta 2b.
    
 0.562
LOC102215396
Catenin (cadherin-associated protein), delta 2a.
    
 0.562
LOC102214474
Uncharacterized protein.
    
 0.532
LOC102207241
Junction plakoglobin a.
    
 0.532
LOC102203802
Uncharacterized protein.
    
 0.532
tmem241
Transmembrane protein 241.
      
 0.524
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.