STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rif1Replication timing regulatory factor 1. (2198 aa)    
Predicted Functional Partners:
LOC102198676
Malate synthase-like.
   
 
 0.894
tp53bp1
Tumor protein p53 binding protein, 1.
    
 0.876
atm
Non-specific serine/threonine protein kinase.
   
 0.874
ENSPNYP00000012513
BRCT domain-containing protein.
   
 0.787
mdc1
Uncharacterized protein.
   
 0.784
pias4
Protein inhibitor of activated STAT, 4a.
    
 0.783
bdp1
SANT domain-containing protein.
   
    0.772
brca1
Uncharacterized protein.
   
 0.764
bard1
BRCA1 associated RING domain 1.
    
 0.761
vrk2
VRK serine/threonine kinase 2; Belongs to the protein kinase superfamily.
    
 0.748
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.