LOC102194732 protein (Pundamilia nyererei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC102194732

FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived). (1004 aa)

Predicted Functional Partners:

LOC102195747

0.699

CDC42

0.699

nrp1

0.646

met

0.625

ENSPNYP00000019921

0.625

ENSPNYP00000019946

0.625

mst1r

0.625

LOC102210937

0.596

rap1a

0.596

LOC102214598

0.596

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	ENSPNYP00000019921	ENSPNYP00000021464	ENSPNYP00000019921	Cell division cycle 42.	Sema domain-containing protein.	0.740
CDC42	ENSPNYP00000019946	ENSPNYP00000021464	ENSPNYP00000019946	Cell division cycle 42.	Protein kinase domain-containing protein.	0.740
CDC42	LOC102194732	ENSPNYP00000021464	ENSPNYP00000017754	Cell division cycle 42.	FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived).	0.699
CDC42	LOC102210937	ENSPNYP00000021464	ENSPNYP00000015275	Cell division cycle 42.	Uncharacterized protein.	0.487
CDC42	LOC102214598	ENSPNYP00000021464	ENSPNYP00000017727	Cell division cycle 42.	RAP1A, member of RAS oncogene family a.	0.487
CDC42	met	ENSPNYP00000021464	ENSPNYP00000002529	Cell division cycle 42.	MET proto-oncogene, receptor tyrosine kinase.	0.740
CDC42	mst1r	ENSPNYP00000021464	ENSPNYP00000020740	Cell division cycle 42.	Macrophage stimulating 1 receptor b.	0.740
CDC42	rap1a	ENSPNYP00000021464	ENSPNYP00000017296	Cell division cycle 42.	Uncharacterized protein.	0.487
ENSPNYP00000019921	CDC42	ENSPNYP00000019921	ENSPNYP00000021464	Sema domain-containing protein.	Cell division cycle 42.	0.740
ENSPNYP00000019921	ENSPNYP00000019946	ENSPNYP00000019921	ENSPNYP00000019946	Sema domain-containing protein.	Protein kinase domain-containing protein.	0.909
ENSPNYP00000019921	LOC102194732	ENSPNYP00000019921	ENSPNYP00000017754	Sema domain-containing protein.	FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived).	0.625
ENSPNYP00000019921	LOC102195747	ENSPNYP00000019921	ENSPNYP00000007261	Sema domain-containing protein.	Cell division cycle 42.	0.740
ENSPNYP00000019921	LOC102210937	ENSPNYP00000019921	ENSPNYP00000015275	Sema domain-containing protein.	Uncharacterized protein.	0.798
ENSPNYP00000019921	LOC102214598	ENSPNYP00000019921	ENSPNYP00000017727	Sema domain-containing protein.	RAP1A, member of RAS oncogene family a.	0.798
ENSPNYP00000019921	met	ENSPNYP00000019921	ENSPNYP00000002529	Sema domain-containing protein.	MET proto-oncogene, receptor tyrosine kinase.	0.867
ENSPNYP00000019921	mst1r	ENSPNYP00000019921	ENSPNYP00000020740	Sema domain-containing protein.	Macrophage stimulating 1 receptor b.	0.871
ENSPNYP00000019921	nrp1	ENSPNYP00000019921	ENSPNYP00000009169	Sema domain-containing protein.	Neuropilin; Belongs to the neuropilin family.	0.748
ENSPNYP00000019921	rap1a	ENSPNYP00000019921	ENSPNYP00000017296	Sema domain-containing protein.	Uncharacterized protein.	0.798
ENSPNYP00000019946	CDC42	ENSPNYP00000019946	ENSPNYP00000021464	Protein kinase domain-containing protein.	Cell division cycle 42.	0.740
ENSPNYP00000019946	ENSPNYP00000019921	ENSPNYP00000019946	ENSPNYP00000019921	Protein kinase domain-containing protein.	Sema domain-containing protein.	0.909