STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102208847T-box transcription factor 6. (803 aa)    
Predicted Functional Partners:
LOC102204496
Mesogenin 1.
   
 0.804
gata4
GATA binding protein 4.
   
 0.646
wnt3a
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 0.636
mfrp
Membrane frizzled-related protein.
    
 0.581
sfrp5
Secreted frizzled-related protein 5.
      
 0.574
cubn
Cubilin (intrinsic factor-cobalamin receptor).
    
 0.550
ENSPNYP00000005803
CUB domain-containing protein.
    
 0.550
pcolce2
Procollagen C-endopeptidase enhancer 2b.
    
 0.550
cdcp2
CUB domain containing protein 2.
    
 0.550
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.550
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.