STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
e2f2Si:ch211-160f23.5. (415 aa)    
Predicted Functional Partners:
rb1
Retinoblastoma 1.
   
 0.972
tfdp1
Transcription factor.
   
 0.969
LOC102209059
Retinoblastoma-like 1 (p107).
   
 0.955
LOC102196756
Retinoblastoma-like 2 (p130).
   
 0.946
ENSPNYP00000014364
RB_B domain-containing protein.
   
 0.944
e2f4
E2F transcription factor 4.
  
 
0.924
e2f1
E2F transcription factor 1.
  
 
0.921
LOC102207116
Cyclin A2; Belongs to the cyclin family.
   
 0.917
ccna1
Cyclin A1; Belongs to the cyclin family.
   
 0.917
ENSPNYP00000007911
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.870
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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