STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col11a1Collagen, type XI, alpha 1a. (1773 aa)    
Predicted Functional Partners:
ENSPNYP00000018997
Uncharacterized protein.
    
  0.737
ENSPNYP00000015162
C1q domain-containing protein.
   
 
0.558
tep1
Uncharacterized protein.
    
 0.554
lig1
DNA ligase.
    
 0.545
itgb4
Integrin beta.
   
 0.525
ENSPNYP00000003490
Integrin beta; Belongs to the integrin beta chain family.
    
  0.513
rptor
Regulatory associated protein of MTOR, complex 1.
    
 0.510
LOC102196666
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
    
 0.494
mlst8
MTOR associated protein, LST8 homolog (S. cerevisiae).
    
  0.489
det1
DET1 partner of COP1 E3 ubiquitin ligase.
    
  0.489
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.