LOC102207798 protein (Pundamilia nyererei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC102207798

Uncharacterized protein. (910 aa)

Predicted Functional Partners:

lrit1

0.615

LOC102201169

0.615

lrit3

0.615

pcsk2

0.602

PTK7

0.600

svep1

0.595

gab2

0.595

LOC102203212

0.595

ENSPNYP00000030122

0.595

tnr

0.593

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNYP00000030122	LOC102201169	ENSPNYP00000030122	ENSPNYP00000015867	Uncharacterized protein.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	0.730
ENSPNYP00000030122	LOC102203212	ENSPNYP00000030122	ENSPNYP00000029995	Uncharacterized protein.	Si:dkey-21a6.5.	0.480
ENSPNYP00000030122	LOC102207798	ENSPNYP00000030122	ENSPNYP00000027781	Uncharacterized protein.	Uncharacterized protein.	0.595
ENSPNYP00000030122	PTK7	ENSPNYP00000030122	ENSPNYP00000017582	Uncharacterized protein.	Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.679
ENSPNYP00000030122	lrit1	ENSPNYP00000030122	ENSPNYP00000000565	Uncharacterized protein.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	0.730
ENSPNYP00000030122	lrit3	ENSPNYP00000030122	ENSPNYP00000027941	Uncharacterized protein.	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	0.730
ENSPNYP00000030122	pcsk2	ENSPNYP00000030122	ENSPNYP00000009083	Uncharacterized protein.	Proprotein convertase subtilisin/kexin type 2; Belongs to the peptidase S8 family.	0.450
ENSPNYP00000030122	svep1	ENSPNYP00000030122	ENSPNYP00000006323	Uncharacterized protein.	Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.	0.480
ENSPNYP00000030122	tnr	ENSPNYP00000030122	ENSPNYP00000014203	Uncharacterized protein.	Tenascin R (restrictin, janusin).	0.801
LOC102201169	ENSPNYP00000030122	ENSPNYP00000015867	ENSPNYP00000030122	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	Uncharacterized protein.	0.730
LOC102201169	LOC102203212	ENSPNYP00000015867	ENSPNYP00000029995	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	Si:dkey-21a6.5.	0.730
LOC102201169	LOC102207798	ENSPNYP00000015867	ENSPNYP00000027781	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	Uncharacterized protein.	0.615
LOC102201169	PTK7	ENSPNYP00000015867	ENSPNYP00000017582	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.929
LOC102201169	lrit1	ENSPNYP00000015867	ENSPNYP00000000565	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.	0.534
LOC102201169	lrit3	ENSPNYP00000015867	ENSPNYP00000027941	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	0.687
LOC102201169	svep1	ENSPNYP00000015867	ENSPNYP00000006323	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.	0.730
LOC102203212	ENSPNYP00000030122	ENSPNYP00000029995	ENSPNYP00000030122	Si:dkey-21a6.5.	Uncharacterized protein.	0.480
LOC102203212	LOC102201169	ENSPNYP00000029995	ENSPNYP00000015867	Si:dkey-21a6.5.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	0.730
LOC102203212	LOC102207798	ENSPNYP00000029995	ENSPNYP00000027781	Si:dkey-21a6.5.	Uncharacterized protein.	0.595
LOC102203212	PTK7	ENSPNYP00000029995	ENSPNYP00000017582	Si:dkey-21a6.5.	Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.679