STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmo4LIM domain only 4b. (165 aa)    
Predicted Functional Partners:
ldb2
LIM domain binding 2a.
   
 0.643
LOC102205819
LIM-domain binding 1b.
   
 0.643
ldb1
LIM domain binding 1a.
   
 0.643
SRF
Serum response factor.
    
 0.601
LOC102208386
MADS-box domain-containing protein.
    
 0.601
tpk1
Thiamine pyrophosphokinase; Belongs to the thiamine pyrophosphokinase family.
    
  0.510
ENSPNYP00000027632
SAE2 domain-containing protein.
    
 
 0.492
GATA2
GATA binding protein 2.
   
 0.466
LOC102204047
GATA binding protein 2a.
   
 0.466
lhx4
LIM homeobox 4.
    
0.465
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.