ENSPNYP00000029636 protein (Pundamilia nyererei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPNYP00000029636

Uncharacterized protein. (87 aa)

Predicted Functional Partners:

MAD2L1

0.859

mad1l1

0.817

cpsf1

0.807

bub3

0.802

cdc16

0.790

bub1b

0.787

ift140

0.782

anapc4

0.781

anapc1

0.776

ENSPNYP00000019294

0.770

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNYP00000019294	ENSPNYP00000029636	ENSPNYP00000019294	ENSPNYP00000029636	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Uncharacterized protein.	0.770
ENSPNYP00000029636	ENSPNYP00000019294	ENSPNYP00000029636	ENSPNYP00000019294	Uncharacterized protein.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.770
ENSPNYP00000029636	MAD2L1	ENSPNYP00000029636	ENSPNYP00000021626	Uncharacterized protein.	Mitotic arrest deficient 2 like 1.	0.859
ENSPNYP00000029636	anapc1	ENSPNYP00000029636	ENSPNYP00000013472	Uncharacterized protein.	Anaphase promoting complex subunit 1.	0.776
ENSPNYP00000029636	anapc4	ENSPNYP00000029636	ENSPNYP00000015490	Uncharacterized protein.	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	0.781
ENSPNYP00000029636	bub1b	ENSPNYP00000029636	ENSPNYP00000001404	Uncharacterized protein.	BUB1 mitotic checkpoint serine/threonine kinase Bb.	0.787
ENSPNYP00000029636	bub3	ENSPNYP00000029636	ENSPNYP00000001624	Uncharacterized protein.	BUB3 mitotic checkpoint protein.	0.802
ENSPNYP00000029636	cdc16	ENSPNYP00000029636	ENSPNYP00000015045	Uncharacterized protein.	Cell division cycle 16 homolog (S. cerevisiae).	0.790
ENSPNYP00000029636	cpsf1	ENSPNYP00000029636	ENSPNYP00000006532	Uncharacterized protein.	Cleavage and polyadenylation specific factor 1.	0.807
ENSPNYP00000029636	ift140	ENSPNYP00000029636	ENSPNYP00000001723	Uncharacterized protein.	Intraflagellar transport 140 homolog (Chlamydomonas).	0.782
ENSPNYP00000029636	mad1l1	ENSPNYP00000029636	ENSPNYP00000008894	Uncharacterized protein.	Mitotic arrest deficient 1 like 1.	0.817
MAD2L1	ENSPNYP00000029636	ENSPNYP00000021626	ENSPNYP00000029636	Mitotic arrest deficient 2 like 1.	Uncharacterized protein.	0.859
MAD2L1	anapc1	ENSPNYP00000021626	ENSPNYP00000013472	Mitotic arrest deficient 2 like 1.	Anaphase promoting complex subunit 1.	0.994
MAD2L1	anapc4	ENSPNYP00000021626	ENSPNYP00000015490	Mitotic arrest deficient 2 like 1.	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	0.998
MAD2L1	bub1b	ENSPNYP00000021626	ENSPNYP00000001404	Mitotic arrest deficient 2 like 1.	BUB1 mitotic checkpoint serine/threonine kinase Bb.	0.999
MAD2L1	bub3	ENSPNYP00000021626	ENSPNYP00000001624	Mitotic arrest deficient 2 like 1.	BUB3 mitotic checkpoint protein.	0.999
MAD2L1	cdc16	ENSPNYP00000021626	ENSPNYP00000015045	Mitotic arrest deficient 2 like 1.	Cell division cycle 16 homolog (S. cerevisiae).	0.995
MAD2L1	mad1l1	ENSPNYP00000021626	ENSPNYP00000008894	Mitotic arrest deficient 2 like 1.	Mitotic arrest deficient 1 like 1.	0.999
anapc1	ENSPNYP00000029636	ENSPNYP00000013472	ENSPNYP00000029636	Anaphase promoting complex subunit 1.	Uncharacterized protein.	0.776
anapc1	MAD2L1	ENSPNYP00000013472	ENSPNYP00000021626	Anaphase promoting complex subunit 1.	Mitotic arrest deficient 2 like 1.	0.994