STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d1TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1. (1185 aa)    
Predicted Functional Partners:
ENSPNYP00000016168
PID domain-containing protein.
 
      0.860
rab2a
RAB2A, member RAS oncogene family.
    
 0.841
ENSPNYP00000030844
Uncharacterized protein.
 
      0.833
LOC102211575
Uncharacterized protein.
    
 0.735
LOC102201613
Uncharacterized protein.
    
 0.735
rab11a
RAB11a, member RAS oncogene family.
    
 0.650
LOC102196204
Uncharacterized protein.
    
 0.650
LOC102203797
RAB11a, member RAS oncogene family, like.
    
 0.650
LOC102200846
Uncharacterized protein.
    
 0.650
LOC102201431
RAB11B, member RAS oncogene family, a.
    
 0.650
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.