STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102213657Uncharacterized protein. (207 aa)    
Predicted Functional Partners:
LOC102215146
Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.
   
 0.662
cs
Citrate synthase; Belongs to the citrate synthase family.
   
   0.656
drg1
Developmentally regulated GTP binding protein 1.
    
   0.650
pole2
DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.
    
   0.650
LOC102195834
Zgc:193812.
    
   0.650
LOC102204982
Zgc:103697.
    
   0.650
ctsb
Cathepsin Ba; Belongs to the peptidase C1 family.
   
 0.624
ctsc
Cathepsin C; Belongs to the peptidase C1 family.
   
 0.593
ctsh
Cathepsin H; Belongs to the peptidase C1 family.
   
 0.586
CTSH
Cathepsin H; Belongs to the peptidase C1 family.
   
 0.586
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.