STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JF72_00120PTS Man IIB. (161 aa)    
Predicted Functional Partners:
JF72_00130
PTS Man IIC.
 
 0.996
JF72_00140
PTS Man IID.
 
 0.986
JF72_00150
PTS Man IIA.
 
 
 0.985
JF72_02550
PTS Man IIA.
 
 
 0.971
JF72_02580
PTS Man IID.
 
 0.966
JF72_03150
PTS Man IID.
 
 0.966
JF72_13490
PTS Man IID.
 
 0.949
JF72_12560
PTS Fru IIABC.
  
 
 0.948
JF72_04130
Phosphocarrier protein HPr.
   
 0.947
JF72_13500
PTS Man IIC.
 
 0.938
Your Current Organism:
Lactobacillus apis
NCBI taxonomy Id: 303541
Other names: CCM 8403, L. apis, LMG 26964, LMG:26964, Lactobacillus apis Killer et al. 2014, Lactobacillus sp. ESL0185, Lactobacillus sp. R4B, Lactobacillus sp. R4C, strain R4B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.