STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JF72_04920CopY/TcrY family copper transport repressor. (145 aa)    
Predicted Functional Partners:
JF72_03780
Uncharacterized protein.
  
 
 0.827
JF72_04910
HAD-superfamily hydrolase.
       0.693
JF72_04930
Hypothetical protein.
       0.658
laaP
LaaP.
    
  0.636
htpX
Heat shock protein HtpX; Belongs to the peptidase M48B family.
  
 
  0.545
JF72_06960
Penicillin-binding protein 1A.
     
 0.485
pbpF
Penicillin-binding protein.
     
 0.485
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
       0.481
JF72_05000
Efflux ABC transporter, permease protein.
    
  0.440
JF72_05640
Putative S-layer protein.
    
  0.403
Your Current Organism:
Lactobacillus apis
NCBI taxonomy Id: 303541
Other names: CCM 8403, L. apis, LMG 26964, LMG:26964, Lactobacillus apis Killer et al. 2014, Lactobacillus sp. ESL0185, Lactobacillus sp. R4B, Lactobacillus sp. R4C, strain R4B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.