STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JF72_05420PRD domain protein. (279 aa)    
Predicted Functional Partners:
JF72_05410
PTS Glc IIABC.
 
 0.991
JF72_13160
PTS Glc IIACB.
 
 0.974
JF72_03330
PTS Glc IIBC.
 
 0.966
JF72_01610
PTS Glc IIBC.
 
 0.923
JF72_05400
Beta-glucosidase/6-phospho-beta- glucosidase/beta- galactosidase; Belongs to the glycosyl hydrolase 1 family.
   
 0.791
JF72_12560
PTS Fru IIABC.
  
 
 0.759
JF72_04130
Phosphocarrier protein HPr.
   
 0.557
JF72_13520
PRD domain protein.
 
   
 0.515
malS
Malate dehydrogenase, oxaloacetate-decarboxylating.
  
    0.447
JF72_05430
Uncharacterized protein.
       0.447
Your Current Organism:
Lactobacillus apis
NCBI taxonomy Id: 303541
Other names: CCM 8403, L. apis, LMG 26964, LMG:26964, Lactobacillus apis Killer et al. 2014, Lactobacillus sp. ESL0185, Lactobacillus sp. R4B, Lactobacillus sp. R4C, strain R4B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.