STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glcDGlycolate oxidase. (466 aa)    
Predicted Functional Partners:
fni
Isopentenyl pyrophosphate isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 0.948
JF72_06400
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.945
JF72_02270
NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.942
hprA
Putative glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.942
JF72_14230
Pyruvate oxidase; Belongs to the TPP enzyme family.
 
 
 0.756
JF72_12490
Putative succinyl-diaminopimelate desuccinylase.
   
 0.719
JF72_12710
Oxidoreductase.
  
 
 0.706
JF72_04830
Phosphate acetyltransferase.
  
 
 0.688
malS
Malate dehydrogenase, oxaloacetate-decarboxylating.
  
 
 0.686
fabG
3-oxoacyl-[acyl-carrier-protein] reductase.
  
 0.683
Your Current Organism:
Lactobacillus apis
NCBI taxonomy Id: 303541
Other names: CCM 8403, L. apis, LMG 26964, LMG:26964, Lactobacillus apis Killer et al. 2014, Lactobacillus sp. ESL0185, Lactobacillus sp. R4B, Lactobacillus sp. R4C, strain R4B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.