STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JF72_08420ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (327 aa)    
Predicted Functional Partners:
JF72_08400
Oligopeptide ABC superfamily ATP binding cassette transporter, permease protein.
 
 0.999
oppB
Oligopeptide transport protein.
 
 0.996
JF72_03470
ABC-type dipeptide/oligopeptide/nickel transporter.
 
 0.995
JF72_08430
Oligopeptide ABC transporter; Belongs to the ABC transporter superfamily.
 
 
0.980
JF72_03460
Putative oligopeptide transporter permease.
 
 0.971
oppA-2
Oligopeptide ABC transporter substrate binding protein.
 
 
 0.947
JF72_03480
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
0.913
oppA
Oligopeptide ABC transporter substrate binding protein.
 
 
 0.908
JF72_08350
Oligopeptide ABC transporter substrate.
 
 
 0.906
oppA-3
Oligopeptide ABC transporter substrate binding protein.
 
 
 0.906
Your Current Organism:
Lactobacillus apis
NCBI taxonomy Id: 303541
Other names: CCM 8403, L. apis, LMG 26964, LMG:26964, Lactobacillus apis Killer et al. 2014, Lactobacillus sp. ESL0185, Lactobacillus sp. R4B, Lactobacillus sp. R4C, strain R4B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.