STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JF72_11850Lactococcin A ABC transporter, ATP binding protein. (529 aa)    
Predicted Functional Partners:
JF72_05360
ABC superfamily ATP binding cassette transporter ABC protein.
 
 
  0.937
JF72_01860
ABC-transporter.
 
0.825
JF72_11840
ABC transporter ATP binding and permease protein.
 
    
0.806
JF72_11820
Hypothetical protein.
  
     0.755
JF72_11730
Kae1-associated kinase.
 
     0.740
JF72_13120
Hypothetical protein.
  
     0.732
JF72_10780
Uncharacterized protein.
 
  0.690
JF72_00550
Hypothetical protein.
  
     0.675
ctrD-2
ABC superfamily ATP binding cassette transporter, ABC protein.
 
 0.601
JF72_08960
Rhodanese family protein.
  
   0.597
Your Current Organism:
Lactobacillus apis
NCBI taxonomy Id: 303541
Other names: CCM 8403, L. apis, LMG 26964, LMG:26964, Lactobacillus apis Killer et al. 2014, Lactobacillus sp. ESL0185, Lactobacillus sp. R4B, Lactobacillus sp. R4C, strain R4B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.