STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JF72_12530ABC superfamily ATP binding cassette transporter, ABC protein. (217 aa)    
Predicted Functional Partners:
JF72_12520
ABC transporter permease protein.
 
 0.999
JF72_12550
ABC superfamily ATP binding cassette transporter, binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.991
JF72_14080
ABC superfamily ATP binding cassette transporter, ABC protein.
  
 
0.816
JF72_02880
Uncharacterized protein.
  
  
  0.736
JF72_12540
Autolysin, amidase.
       0.705
JF72_04610
Ferric uptake regulation protein; Belongs to the Fur family.
  
  
 0.590
JF72_01700
ABC superfamily ATP binding cassette transporter, binding protein.
 
0.535
JF72_09400
Multidrug ABC transporter ATP binding protein.
 
 
0.523
JF72_10750
ABC transporter, ATP-binding protein.
 
 
0.514
glnQ1
Amino acid ABC transporter, ATP-binding protein.
 
    
0.500
Your Current Organism:
Lactobacillus apis
NCBI taxonomy Id: 303541
Other names: CCM 8403, L. apis, LMG 26964, LMG:26964, Lactobacillus apis Killer et al. 2014, Lactobacillus sp. ESL0185, Lactobacillus sp. R4B, Lactobacillus sp. R4C, strain R4B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.