STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C662_03215IS4 family transposase; COG5421 Transposase. (566 aa)    
Predicted Functional Partners:
C662_14736
Hypothetical protein.
  
     0.709
C662_03210
IS4 family transposase.
 
    
0.689
C662_14746
Hypothetical protein; COG1672 Predicted ATPase (AAA+ superfamily).
  
     0.686
C662_10426
Hypothetical protein.
  
     0.648
C662_15918
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
     0.543
C662_06509
COG0477 Permeases of the major facilitator superfamily.
  
     0.538
C662_16858
Hypothetical protein; COG0374 Ni,Fe-hydrogenase I large subunit.
  
     0.464
C662_06554
VanZ family protein.
  
     0.440
C662_16038
Integrase family protein; COG4973 Site-specific recombinase XerC; overlaps another CDS with the same product name.
  
     0.439
C662_01115
Hypothetical protein.
  
     0.435
Your Current Organism:
Thauera sp. 28
NCBI taxonomy Id: 303682
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.