Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
C662_03588 | C662_03713 | COG1960 Acyl-CoA dehydrogenases. | Rieske (2Fe-2S) domain-containing protein; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit. | 0.770 |
C662_03588 | C662_03828 | COG1960 Acyl-CoA dehydrogenases. | Hypothetical protein. | 0.768 |
C662_03588 | C662_03878 | COG1960 Acyl-CoA dehydrogenases. | CoA-transferase subunit beta; COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit. | 0.825 |
C662_03588 | C662_03883 | COG1960 Acyl-CoA dehydrogenases. | CoA-transferase subunit alpha; COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit. | 0.824 |
C662_03588 | C662_03888 | COG1960 Acyl-CoA dehydrogenases. | Glyoxalase/bleomycin resistance protein/dioxygenase; COG0346 Lactoylglutathione lyase and related lyases. | 0.935 |
C662_03588 | C662_04073 | COG1960 Acyl-CoA dehydrogenases. | LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins. | 0.753 |
C662_03713 | C662_03588 | Rieske (2Fe-2S) domain-containing protein; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit. | COG1960 Acyl-CoA dehydrogenases. | 0.770 |
C662_03713 | C662_03828 | Rieske (2Fe-2S) domain-containing protein; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit. | Hypothetical protein. | 0.772 |
C662_03713 | C662_03878 | Rieske (2Fe-2S) domain-containing protein; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit. | CoA-transferase subunit beta; COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit. | 0.785 |
C662_03713 | C662_03883 | Rieske (2Fe-2S) domain-containing protein; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit. | CoA-transferase subunit alpha; COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit. | 0.793 |
C662_03713 | C662_03888 | Rieske (2Fe-2S) domain-containing protein; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit. | Glyoxalase/bleomycin resistance protein/dioxygenase; COG0346 Lactoylglutathione lyase and related lyases. | 0.781 |
C662_03713 | C662_04073 | Rieske (2Fe-2S) domain-containing protein; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit. | LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins. | 0.749 |
C662_03828 | C662_03588 | Hypothetical protein. | COG1960 Acyl-CoA dehydrogenases. | 0.768 |
C662_03828 | C662_03713 | Hypothetical protein. | Rieske (2Fe-2S) domain-containing protein; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit. | 0.772 |
C662_03828 | C662_03878 | Hypothetical protein. | CoA-transferase subunit beta; COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit. | 0.890 |
C662_03828 | C662_03883 | Hypothetical protein. | CoA-transferase subunit alpha; COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit. | 0.885 |
C662_03828 | C662_03888 | Hypothetical protein. | Glyoxalase/bleomycin resistance protein/dioxygenase; COG0346 Lactoylglutathione lyase and related lyases. | 0.858 |
C662_03828 | C662_04073 | Hypothetical protein. | LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins. | 0.771 |
C662_03828 | C662_04088 | Hypothetical protein. | NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases. | 0.550 |
C662_03878 | C662_03588 | CoA-transferase subunit beta; COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit. | COG1960 Acyl-CoA dehydrogenases. | 0.825 |
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