STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C662_06077Metal dependent phosphohydrolase; COG0840 Methyl-accepting chemotaxis protein. (1000 aa)    
Predicted Functional Partners:
C662_06544
COG0515 Serine/threonine protein kinase.
 
 
 0.763
C662_00810
PAS domain-containing protein/PAC sensor signal transduction histidine kinase; COG2202 FOG: PAS/PAC domain.
 
 
  0.726
metH
B12-dependent methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.720
C662_15553
Hypothetical protein; COG2202 FOG: PAS/PAC domain.
 
 
 
 0.699
C662_14906
COG0642 Signal transduction histidine kinase.
 
 
  0.690
C662_12252
PAS domain-containing protein domain S-box/diguanylate cyclase (GGDEF) domain-containing protein; COG0840 Methyl-accepting chemotaxis protein.
 
 0.686
C662_08699
Putative sensor-regulator protein; COG0642 Signal transduction histidine kinase.
 
 
 0.673
C662_09800
COG0642 Signal transduction histidine kinase.
    
 0.658
C662_03583
FAD-binding oxidoreductase; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
     
 0.641
C662_12147
Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
     
 0.641
Your Current Organism:
Thauera sp. 28
NCBI taxonomy Id: 303682
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