Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C662_07124Hypothetical protein. (109 aa)    
Predicted Functional Partners:
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
 0.985
C662_00370
Cache sensor protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.699
C662_01675
COG1536 Flagellar motor switch protein.
   
   0.551
C662_07129
Hypothetical protein.
       0.550
folD
Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
    0.544
C662_00525
Hypothetical protein.
  
     0.489
C662_05335
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.483
C662_06564
Hypothetical protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 
 0.478
C662_08679
Hypothetical protein.
  
     0.478
C662_03538
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.451
Your Current Organism:
Thauera sp. 28
NCBI taxonomy Id: 303682
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