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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C662_07288COG3001 Fructosamine-3-kinase. (305 aa)    
Predicted Functional Partners:
C662_07283
Cyclic nucleotide-binding protein; COG0515 Serine/threonine protein kinase.
       0.774
C662_13396
COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
     0.689
argH
COG0165 Argininosuccinate lyase.
       0.663
C662_08055
PrkA family serine protein kinase; COG2766 Putative Ser protein kinase.
   
    0.571
C662_19155
COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
     0.516
C662_07268
Alginate biosynthesis regulatory protein AlgR; COG3279 Response regulator of the LytR/AlgR family.
       0.448
C662_07273
Putative alginate biosynthesis protein AlgZ/FimS; COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
       0.447
Your Current Organism:
Thauera sp. 28
NCBI taxonomy Id: 303682
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