Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C662_08095COG3038 Cytochrome B561. (197 aa)    
Predicted Functional Partners:
C662_08100
Hypothetical protein; Belongs to the UPF0312 family.
  
 0.987
C662_08105
Hypothetical protein; Belongs to the UPF0312 family.
 
  
 0.874
C662_08090
Extradiol ring-cleavage dioxygenase III subunit B.
  
  
 0.829
C662_00315
COG3038 Cytochrome B561.
  
     0.705
C662_13421
YceI family protein; Belongs to the UPF0312 family.
 
  
 0.630
C662_08085
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.544
C662_17013
Hypothetical protein; COG2945 Predicted hydrolase of the alpha/beta superfamily.
  
     0.401
Your Current Organism:
Thauera sp. 28
NCBI taxonomy Id: 303682
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