Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C662_17023VanZ family protein. (366 aa)    
Predicted Functional Partners:
C662_12827
Phasin family protein.
  
     0.767
C662_10581
Type 4 pilus biogenesis.
  
     0.742
C662_10391
Phasin family protein.
  
     0.741
C662_10973
Lipoprotein.
  
     0.741
C662_18268
Hypothetical protein.
  
     0.726
C662_10978
COG2913 Small protein A (tmRNA-binding).
  
     0.722
C662_00965
Hypothetical protein.
  
     0.710
C662_09488
Hypothetical protein; COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.
 
     0.710
C662_18908
Phasin family protein.
  
     0.704
C662_12942
Phasin family protein.
  
     0.700
Your Current Organism:
Thauera sp. 28
NCBI taxonomy Id: 303682
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