Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
Experiments
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[Homology]
Score
C662_17618Electron transporter SCO1/SenC; COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems. (205 aa)    
Predicted Functional Partners:
C662_10691
Cytochrome C oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 0.944
C662_10701
COG3175 Cytochrome oxidase assembly factor.
 
 0.888
C662_10726
Cytochrome oxidase assembly; COG1612 Uncharacterized protein required for cytochrome oxidase assembly.
 
 0.879
C662_07888
Putative thioredoxin; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
 
 0.861
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
  
 0.825
C662_17283
COG2847 Uncharacterized protein conserved in bacteria.
 
   
 0.779
C662_05802
Periplasmic protein thiol/disulfide oxidoreductase DsbE; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
 
 0.772
C662_06564
Hypothetical protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 
 0.722
C662_10716
Hypothetical protein.
  
 
 0.679
C662_10696
Cytochrome C oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
 
 0.665
Your Current Organism:
Thauera sp. 28
NCBI taxonomy Id: 303682
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