A0A1V6T9D9 protein (Penicillium steckii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1V6T9D9

Uncharacterized protein. (610 aa)

Predicted Functional Partners:

A0A1V6T9L3

0.987

A0A1V6STD3

0.981

A0A1V6TGP7

0.963

NOP7

0.960

ERB1

0.956

A0A1V6T5M5

0.956

A0A1V6SNS2

0.955

A0A1V6TRY1

0.952

A0A1V6SK34

0.949

A0A1V6SV42

0.949

Your Current Organism:

Penicillium steckii

NCBI taxonomy Id: 303698
Other names: CBS 260.55, P. steckii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1V6SK34	A0A1V6SNS2	A0A1V6SK34	A0A1V6SNS2	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.932
A0A1V6SK34	A0A1V6STD3	A0A1V6SK34	A0A1V6STD3	Uncharacterized protein.	CBF domain-containing protein.	0.917
A0A1V6SK34	A0A1V6SV42	A0A1V6SK34	A0A1V6SV42	Uncharacterized protein.	Uncharacterized protein.	0.934
A0A1V6SK34	A0A1V6T5M5	A0A1V6SK34	A0A1V6T5M5	Uncharacterized protein.	Uncharacterized protein.	0.932
A0A1V6SK34	A0A1V6T9D9	A0A1V6SK34	A0A1V6T9D9	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A1V6SK34	A0A1V6T9L3	A0A1V6SK34	A0A1V6T9L3	Uncharacterized protein.	Brix domain-containing protein.	0.936
A0A1V6SK34	A0A1V6TGP7	A0A1V6SK34	A0A1V6TGP7	Uncharacterized protein.	Brix domain-containing protein.	0.913
A0A1V6SK34	A0A1V6TRY1	A0A1V6SK34	A0A1V6TRY1	Uncharacterized protein.	Brix domain-containing protein.	0.830
A0A1V6SK34	ERB1	A0A1V6SK34	A0A1V6ST53	Uncharacterized protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.894
A0A1V6SK34	NOP7	A0A1V6SK34	A0A1V6T7U0	Uncharacterized protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.871
A0A1V6SNS2	A0A1V6SK34	A0A1V6SNS2	A0A1V6SK34	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.932
A0A1V6SNS2	A0A1V6STD3	A0A1V6SNS2	A0A1V6STD3	Uncharacterized protein; Belongs to the DEAD box helicase family.	CBF domain-containing protein.	0.946
A0A1V6SNS2	A0A1V6SV42	A0A1V6SNS2	A0A1V6SV42	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.943
A0A1V6SNS2	A0A1V6T5M5	A0A1V6SNS2	A0A1V6T5M5	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.980
A0A1V6SNS2	A0A1V6T9D9	A0A1V6SNS2	A0A1V6T9D9	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.955
A0A1V6SNS2	A0A1V6T9L3	A0A1V6SNS2	A0A1V6T9L3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Brix domain-containing protein.	0.869
A0A1V6SNS2	A0A1V6TGP7	A0A1V6SNS2	A0A1V6TGP7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Brix domain-containing protein.	0.884
A0A1V6SNS2	A0A1V6TRY1	A0A1V6SNS2	A0A1V6TRY1	Uncharacterized protein; Belongs to the DEAD box helicase family.	Brix domain-containing protein.	0.902
A0A1V6SNS2	ERB1	A0A1V6SNS2	A0A1V6ST53	Uncharacterized protein; Belongs to the DEAD box helicase family.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.957
A0A1V6SNS2	NOP7	A0A1V6SNS2	A0A1V6T7U0	Uncharacterized protein; Belongs to the DEAD box helicase family.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.950