A0A1V6TRV1 protein (Penicillium steckii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1V6TRV1

Uncharacterized protein. (531 aa)

Predicted Functional Partners:

A0A1V6TD64

0.960

A0A1V6TPL3

0.960

A0A1V6TEQ3

0.958

A0A1V6TUY1

0.952

A0A1V6TYV1

0.952

A0A1V6SNL0

0.949

A0A1V6TVQ9

0.862

A0A1V6U118

0.848

A0A1V6U1T9

0.802

A0A1V6TZL5

0.784

Your Current Organism:

Penicillium steckii

NCBI taxonomy Id: 303698
Other names: CBS 260.55, P. steckii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6SNL0	A0A1V6TD64	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A1V6SNL0	A0A1V6TEQ3	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A1V6SNL0	A0A1V6TPL3	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A1V6SNL0	A0A1V6TRV1	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A1V6SNL0	A0A1V6TUY1	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A1V6SNL0	A0A1V6TVQ9	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.968
A0A1V6SNL0	A0A1V6TYV1	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.986
A0A1V6SNL0	A0A1V6TZL5	Uncharacterized protein.	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation.	0.934
A0A1V6SNL0	A0A1V6U118	Uncharacterized protein.	PAT1 domain-containing protein.	0.946
A0A1V6TD64	A0A1V6SNL0	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A1V6TD64	A0A1V6TEQ3	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A1V6TD64	A0A1V6TPL3	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A1V6TD64	A0A1V6TRV1	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A1V6TD64	A0A1V6TUY1	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A1V6TD64	A0A1V6TVQ9	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.975
A0A1V6TD64	A0A1V6TYV1	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.990
A0A1V6TD64	A0A1V6U118	Uncharacterized protein.	PAT1 domain-containing protein.	0.986
A0A1V6TEQ3	A0A1V6SNL0	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A1V6TEQ3	A0A1V6TD64	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A1V6TEQ3	A0A1V6TPL3	Uncharacterized protein.	Uncharacterized protein.	0.998