STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N306_03536U5 small nuclear ribonucleoprotein 200 kDa helicase. (124 aa)    
Predicted Functional Partners:
N306_12879
Pre-mRNA-processing factor 6.
   
 0.999
N306_15021
116 kDa U5 small nuclear ribonucleoprotein component.
   
 0.999
N306_10469
Pre-mRNA-processing-splicing factor 8.
   
 0.999
N306_13226
U5 small nuclear ribonucleoprotein 40 kDa protein.
   
 0.999
N306_11981
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.997
N306_01091
Small nuclear ribonucleoprotein-associated protein B.
   
 0.997
N306_03194
Splicing factor 3B subunit 3.
   
 
 0.997
N306_04234
Small nuclear ribonucleoprotein F.
   
 0.997
N306_04881
Small nuclear ribonucleoprotein Sm D3.
   
 0.996
N306_07385
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
    
 0.996
Your Current Organism:
Opisthocomus hoazin
NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.