STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N306_00242RNA polymerase-associated protein CTR9. (1152 aa)    
Predicted Functional Partners:
N306_01447
Parafibromin.
   
 0.999
N306_15293
RNA polymerase-associated protein LEO1.
   
 0.999
N306_08069
RNA polymerase-associated protein RTF1.
   
 0.997
N306_15258
WD repeat-containing protein 61.
    
 0.996
N306_06276
DNA-directed RNA polymerase II subunit RPB3.
  
 0.973
N306_10494
Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.
   
 0.971
N306_02835
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.957
N306_05834
DNA-directed RNA polymerases I, II, and III subunit RPABC3.
   
 0.951
N306_13958
DNA-directed RNA polymerase II subunit RPB4.
    
  0.935
N306_00925
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
  
 0.931
Your Current Organism:
Opisthocomus hoazin
NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin
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