STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N306_08541Uncharacterized protein. (180 aa)    
Predicted Functional Partners:
N306_15219
Pre-rRNA processing protein FTSJ3.
   
 
 0.707
N306_04161
Putative ribosomal RNA methyltransferase 2.
   
 
 0.695
N306_07658
Replication protein A 32 kDa subunit.
    
   0.525
N306_03755
Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.
    
   0.525
N306_03388
CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication.
    
   0.443
N306_02920
Spindle assembly abnormal protein 6.
    
   0.443
N306_14880
tRNA (Guanine(10)-N2)-methyltransferase.
   
  
 0.432
N306_06384
tRNA (Adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A.
   
  
 0.407
N306_09205
tRNA (Guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4.
   
  
 0.403
Your Current Organism:
Opisthocomus hoazin
NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin
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