STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N306_03408Survival of motor neuron-related-splicing factor 30. (238 aa)    
Predicted Functional Partners:
N306_12879
Pre-mRNA-processing factor 6.
    
 
 0.960
N306_03901
U2 small nuclear ribonucleoprotein A.
     
 0.938
N306_07378
PHD finger-like domain-containing protein 5A.
     
 0.918
N306_07959
U2 snRNP-associated SURP motif-containing protein.
    
  0.916
N306_04813
Splicing factor 45.
   
 
  0.905
N306_01048
Splicing factor 3A subunit 2.
    
  0.822
N306_13048
Splicing factor 3B subunit 1.
   
 0.810
N306_13746
Poly(U)-binding-splicing factor PUF60.
   
  0.788
N306_13603
U2 small nuclear ribonucleoprotein B.
   
 0.771
N306_03194
Splicing factor 3B subunit 3.
  
 
 0.767
Your Current Organism:
Opisthocomus hoazin
NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.