STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N306_07084Collagen alpha-1(IV) chain. (1375 aa)    
Predicted Functional Partners:
N306_15022
Collagen alpha-1(I) chain.
 
  
  0.823
N306_03282
Fibrillar collagen NC1 domain-containing protein.
 
  
  0.821
N306_00795
Integrin beta.
    
 0.567
N306_00696
Integrin beta.
    
 0.565
N306_15515
Integrin alpha-1; Belongs to the integrin alpha chain family.
    
 0.563
N306_03188
Integrin alpha-V; Belongs to the integrin alpha chain family.
    
 0.562
N306_04112
Integrin beta.
    
 0.548
N306_04054
Integrin alpha-6; Belongs to the integrin alpha chain family.
    
 0.545
N306_12603
Integrin alpha-8; Belongs to the integrin alpha chain family.
    
 0.545
N306_04502
Integrin beta.
    
 0.543
Your Current Organism:
Opisthocomus hoazin
NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.