STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N306_01863E3 ubiquitin-protein ligase TRIM39. (162 aa)    
Predicted Functional Partners:
N306_01862
Butyrophilin subfamily 3 member A2.
 
     0.851
N306_13065
E3 ubiquitin-protein ligase TRIM39.
 
      0.737
N306_13069
Zinc finger protein RFP.
 
      0.726
N306_13071
Zinc finger protein RFP.
 
      0.665
N306_03660
Ubiquitin-40S ribosomal protein S27a.
    
  0.660
N306_10170
Inducible T-cell costimulator.
    
 0.574
N306_13165
Putative ATP-dependent RNA helicase DDX58.
    
 0.544
N306_04104
Interferon-induced helicase C domain-containing protein 1.
   
 0.531
N306_06769
Protein argonaute-3.
    
 0.522
N306_07135
Protein argonaute-4.
    
 0.522
Your Current Organism:
Opisthocomus hoazin
NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.