STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N306_15082E3 ubiquitin-protein ligase RNF128. (340 aa)    
Predicted Functional Partners:
N306_15327
Ubiquitin carboxyl-terminal hydrolase 8; Belongs to the peptidase C19 family.
    
 0.694
N306_10353
Ubiquitin carboxyl-terminal hydrolase 2.
    
 0.602
N306_03660
Ubiquitin-40S ribosomal protein S27a.
    
  0.594
N306_12067
Ubiquitin-40S ribosomal protein S27a.
    
  0.594
N306_08476
RING finger protein 150.
  
 
0.506
N306_08583
Reticulocalbin-1.
      
 0.495
N306_14053
Ubiquitin carboxyl-terminal hydrolase.
    
 0.490
N306_03688
VIP peptides.
      
 0.463
N306_10257
E3 ubiquitin-protein ligase RNF13.
      
0.444
N306_07835
E3 ubiquitin-protein ligase RNF149.
   
 
0.440
Your Current Organism:
Opisthocomus hoazin
NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.