STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N306_12822E3 ubiquitin-protein ligase PDZRN3. (758 aa)    
Predicted Functional Partners:
N306_12823
E3 ubiquitin-protein ligase PDZRN3.
 
 
    0.901
N306_01372
2-5A-dependent ribonuclease.
    
 0.860
N306_08922
Baculoviral IAP repeat-containing protein 6.
   
 0.854
N306_03660
Ubiquitin-40S ribosomal protein S27a.
    
 0.784
N306_12067
Ubiquitin-40S ribosomal protein S27a.
    
  0.755
N306_01670
Ubiquitin-conjugating enzyme E2 variant 1.
    
 0.723
N306_07328
TGF-beta-activated kinase 1 and MAP3K7-binding protein 3.
    
 0.706
N306_14394
Tumor necrosis factor receptor type 1-associated DEATH domain protein.
    
 0.696
N306_08973
UV excision repair protein RAD23 B.
   
 0.639
N306_07989
Ubiquitin-conjugating enzyme E2 E3; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.638
Your Current Organism:
Opisthocomus hoazin
NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin
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