STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N306_05196Deubiquitinating protein VCIP135. (1128 aa)    
Predicted Functional Partners:
N306_06260
NSFL1 cofactor p47.
    
 
 0.976
N306_08524
Ubiquitin fusion degradation protein 1.
    
 
 0.968
N306_12428
UBX domain-containing protein 2B.
    
 
 0.963
N306_03293
UBX domain-containing protein 7.
   
 
 0.961
N306_05786
UBX domain-containing protein 2A.
    
 
 0.957
N306_08188
Nuclear protein localization protein 4.
    
 
 0.868
N306_04453
Spermatogenesis-associated protein 5.
    
 
 0.861
N306_03660
Ubiquitin-40S ribosomal protein S27a.
   
  0.677
N306_12067
Ubiquitin-40S ribosomal protein S27a.
    
  0.661
N306_11975
TNFAIP3-interacting protein 1.
    
 0.659
Your Current Organism:
Opisthocomus hoazin
NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.