N306_15279 protein (Opisthocomus hoazin) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N306_15279

Ras-related protein Rab-27A. (221 aa)

Predicted Functional Partners:

N306_07079

0.753

N306_11433

0.674

N306_07305

0.652

N306_08313

0.632

N306_07542

0.608

N306_15547

0.608

N306_05135

0.600

N306_12149

0.585

N306_02623

0.577

N306_07059

0.559

Your Current Organism:

Opisthocomus hoazin

NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N306_02623	N306_05135	A0A091XM26	A0A091VTQ1	Protein prenyltransferase alpha subunit repeat-containing protein 1.	EF-hand calcium-binding domain-containing protein 4A.	0.517
N306_02623	N306_07059	A0A091XM26	A0A091WN32	Protein prenyltransferase alpha subunit repeat-containing protein 1.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.999
N306_02623	N306_07542	A0A091XM26	A0A091WGZ2	Protein prenyltransferase alpha subunit repeat-containing protein 1.	Ras-related protein Rab-3B.	0.657
N306_02623	N306_08313	A0A091XM26	A0A091WIF4	Protein prenyltransferase alpha subunit repeat-containing protein 1.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.769
N306_02623	N306_15279	A0A091XM26	A0A091WJU2	Protein prenyltransferase alpha subunit repeat-containing protein 1.	Ras-related protein Rab-27A.	0.577
N306_02623	N306_15547	A0A091XM26	A0A091WQP8	Protein prenyltransferase alpha subunit repeat-containing protein 1.	Ras-related protein Rab-3C.	0.657
N306_05135	N306_02623	A0A091VTQ1	A0A091XM26	EF-hand calcium-binding domain-containing protein 4A.	Protein prenyltransferase alpha subunit repeat-containing protein 1.	0.517
N306_05135	N306_07059	A0A091VTQ1	A0A091WN32	EF-hand calcium-binding domain-containing protein 4A.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.626
N306_05135	N306_07542	A0A091VTQ1	A0A091WGZ2	EF-hand calcium-binding domain-containing protein 4A.	Ras-related protein Rab-3B.	0.401
N306_05135	N306_08313	A0A091VTQ1	A0A091WIF4	EF-hand calcium-binding domain-containing protein 4A.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.760
N306_05135	N306_15279	A0A091VTQ1	A0A091WJU2	EF-hand calcium-binding domain-containing protein 4A.	Ras-related protein Rab-27A.	0.600
N306_07059	N306_02623	A0A091WN32	A0A091XM26	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Protein prenyltransferase alpha subunit repeat-containing protein 1.	0.999
N306_07059	N306_05135	A0A091WN32	A0A091VTQ1	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	EF-hand calcium-binding domain-containing protein 4A.	0.626
N306_07059	N306_07542	A0A091WN32	A0A091WGZ2	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Ras-related protein Rab-3B.	0.660
N306_07059	N306_08313	A0A091WN32	A0A091WIF4	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.857
N306_07059	N306_15279	A0A091WN32	A0A091WJU2	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Ras-related protein Rab-27A.	0.559
N306_07059	N306_15547	A0A091WN32	A0A091WQP8	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	Ras-related protein Rab-3C.	0.660
N306_07079	N306_07542	A0A091VLE4	A0A091WGZ2	Synaptotagmin-like 2.	Ras-related protein Rab-3B.	0.611
N306_07079	N306_15279	A0A091VLE4	A0A091WJU2	Synaptotagmin-like 2.	Ras-related protein Rab-27A.	0.753
N306_07079	N306_15547	A0A091VLE4	A0A091WQP8	Synaptotagmin-like 2.	Ras-related protein Rab-3C.	0.611