STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N306_02421E3 ubiquitin-protein ligase RNF8. (136 aa)    
Predicted Functional Partners:
N306_02422
E3 ubiquitin-protein ligase RNF8.
 
     0.925
N306_01670
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.816
N306_03660
Ubiquitin-40S ribosomal protein S27a.
    
 0.810
N306_13115
PAX-interacting protein 1.
    
 0.806
N306_00838
Ubiquitin-conjugating enzyme E2 variant 2.
   
 0.797
N306_12067
Ubiquitin-40S ribosomal protein S27a.
    
  0.786
N306_02419
Cap-specific mRNA (Nucleoside-2'-O-)-methyltransferase 1.
 
      0.763
N306_14217
E3 ubiquitin-protein ligase HERC2.
   
 0.756
N306_12641
Tumor suppressor p53-binding protein 1.
    
 0.751
N306_01240
Transket_pyr domain-containing protein.
    
 
 0.704
Your Current Organism:
Opisthocomus hoazin
NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin
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