STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0018Conserved hypothetical protein. (215 aa)    
Predicted Functional Partners:
MCP_0017
Conserved hypothetical protein; Contains one ATP-grasp fold domain (IPR011761); Similar to ribosomal protein S6 modification protein in Archaeoglobus fulgidus (O27981).
       0.774
MCP_2668
Putative Na(+)/H(+) antiporter.
   
    0.702
MCP_1666
Conserved hypothetical protein.
   
    0.688
MCP_1017
Putative surface layer protein; Contains two PKD domains (IPR000601).
   
    0.606
MCP_0019
Conserved hypothetical protein; Belongs to the Protein of unknown function UPF0147 family (IPR005354).
       0.513
rps19e
30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
       0.416
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.