STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0028Glyoxalase family protein. (136 aa)    
Predicted Functional Partners:
echF
Ech hydrogenase subunit F.
  
  
 0.721
MCP_2638
4Fe-4S ferredoxin, iron-sulfur binding protein.
  
  
 0.721
MCP_0027
Conserved hypothetical protein; Contains one Cobalamin vitamin B12-binding domain (IPR006158); Contains one Elongator protein 3/MiaB/NifB domain (IPR006638).; Contains one Radical SAM domain (IPR007197).
       0.627
lysS
lysyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.627
MCP_0030
Conserved hypothetical protein.
  
    0.580
MCP_0026
Putative haloacid dehalogenase.
     
 0.578
MCP_0032
Conserved hypothetical protein; Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA/RNA precursor pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions.
 
     0.570
MCP_0024
Conserved hypothetical protein.
       0.568
MCP_0025
Conserved hypothetical protein.
       0.565
coaD
Phosphopantetheine adenylyltransferase.
       0.500
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.