STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0043Conserved hypothetical protein; Belongs to the Sjogrens syndrome scleroderma autoantigen 1family (IPR009563). (149 aa)    
Predicted Functional Partners:
MCP_0019
Conserved hypothetical protein; Belongs to the Protein of unknown function UPF0147 family (IPR005354).
       0.582
MCP_0072
Putative metal-dependent phosphohydrolase.
       0.536
MCP_0861
Similar to 3-hexulose-6-phosphate synthase in Methanosarcina barkeri (Q46DA4).
       0.466
secG
Putative protein transport protein SEC61 subunit beta homolog; Involved in protein export. The function of the beta subunit is unknown, but it may be involved in stabilization of the trimeric complex.
       0.460
MCP_0919
Conserved hypothetical protein.
       0.458
MCP_0026
Putative haloacid dehalogenase.
       0.446
MCP_0044
Conserved hypothetical protein; Contains at least one 4Fe-4S ferredoxin, iron-sulfur binding domain (IPR001450).
       0.423
MCP_0045
GTP-binding protein.
       0.423
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.