Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MCP_0044Conserved hypothetical protein; Contains at least one 4Fe-4S ferredoxin, iron-sulfur binding domain (IPR001450). (268 aa)    
Predicted Functional Partners:
MCP_0045
GTP-binding protein.
       0.773
MCP_0046
Hypothetical protein.
       0.526
MCP_2157
Hypothetical protein; Contains at least one 4Fe-4S ferredoxin, iron-sulfur binding domain (IPR001450).
 
     0.526
MCP_1481
Hypothetical protein.
  
     0.525
MCP_1747
Conserved hypothetical protein; Contains one Beta-lactamase-like domain (IPR001279).
 
     0.431
MCP_0043
Conserved hypothetical protein; Belongs to the Sjogrens syndrome scleroderma autoantigen 1family (IPR009563).
       0.423
MCP_0274
Conserved hypothetical protein; Contains two 4Fe-4S ferredoxin, iron-sulfur binding domains (IPR001450).
  
     0.400
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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