STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCP_0064Putative ATP-dependent helicase. (824 aa)    
Predicted Functional Partners:
MCP_2322
Conserved hypothetical protein; Contains one RNA binding S1 domain (IPR003029); Contains one RNucleic acid binding, OB-fold, tRNA/helicase-type domain (IPR004365).; Contains one Phosphoesterase, RecJ-like (IPR001667).
 
  
 0.688
MCP_0063
Conserved hypothetical protein.
       0.671
MCP_2845
Conserved hypothetical protein; Belongs to the Protein of unknown function UPF0153 family (IPR005358).
 
    0.625
mutS2
Putative DNA mismatch repair protein; Has ATPase and non-specific DNA-binding activities. Belongs to the DNA mismatch repair MutS family. Archaeal Muts2 subfamily.
  
     0.616
aroK
Shikimate kinase.
 
     0.608
MCP_0206
Conserved hypothetical protein; Belongs to the NMD3 family (IPR007064).
  
     0.595
MCP_0066
Putative transcriptional regulator.
 
     0.556
MCP_1516
Archaeosine tRNA-ribosyltransferase.
  
     0.550
MCP_2814
Putative ArsR family transcriptional regulator.
  
     0.547
MCP_2546
Conserved hypothetical protein; Contains one Protein of unknown function DUF1616 domain (IPR011674).
  
    0.510
Your Current Organism:
Methanocella paludicola
NCBI taxonomy Id: 304371
Other names: M. paludicola SANAE, Methanocella paludicola SANAE, methanogenic archaeon SANAE, methanogenic archaeon str. SANAE, methanogenic archaeon strain SANAE
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.